The following are the data sources used to build the database.

 

 

 Assembly information: COW
Assembly ID (dbSNP)    Assembly name    RefSeq Assembly ID
UMD v3.1.1 UMD3.1 GCF_000003055.5
BTAU v4.6.1 BTAU4.6 GCF_000003205.5
BTAU v4.2 - GCF_000003205.4

 

 

Chip information (source): COW
SNP chipSNP namesNative positionsAllele coding

latest
dbSNP
build

Interbull
info

Illumina 3k  iManifest (Illumina)   iManifest (Illumina)   iManifest (Illumina)   146   Interbull 
Illumina LD v1  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina)  146  Interbull
Illumina LD v1.1  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina) 146  N/A
Illumina LD v.2  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina) 146  N/A
Illumina 54k v.1  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina) 146  Interbull
Illumina 54k v.2  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina)  146  Interbull
Illumina HD  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina) 146  Interbull
Affymetrix HD  Axiom GW Bos v.35  Axiom GW Bos v.35  Axiom GW Bos v.35 146  N/A
GeneSeek Dairy v.2 iManifest iManifest iManifest 146 N/A NEW!!
Geneseek GPP v.1  iManifest (Geneseek)  iManifest (Geneseek)  iManifest (Geneseek) 146  Interbull
Geneseek GPP v.2  SNP list (Geneseek)  linked to Illumina1  linked to Illumina1 146  Interbull
Geneseek GPP v.3  iManifest (Geneseek)  iManifest (Geneseek)  iManifest (Geneseek) 146  N/A
Geneseek GPP HD  SNP list (Geneseek)  linked to Illumina1  linked to Illumina1 146  Interbull
Geneseek GGP HD v.2  iManifest (Geneseek)  iManifest (Geneseek) iManifest (Geneseek) 146 N/A
ICBF IDV v.2 iManifest (ICBF) iManifest (ICBF) iManifest (ICBF) 146 N/A NEW!!
ICBF IDV v.3 iManifest (ICBF) iManifest (ICBF) iManifest (ICBF) 146 N/A NEW!!

1 Illumina information corresponding to these SNP names were used to obtain such information (which might be incomplete)

 

 


  

Assembly information: PIG
Assembly ID (dbSNP)   Assembly name   RefSeq Assembly ID
Sscrofa v10.2 Sscrofa10.2 GCF_000003025.5


 

Chip information (source): PIG
SNP chipSNP namesNative positionsAllele coding

latest
dbSNP
build

Illumina 60k v1  iManifest (Illumina)   iManifest (Illumina)   iManifest (Illumina)  143
Illumina 60k v2  iManifest (Illumina)  iManifest (Illumina)  iManifest (Illumina)  143
GeneSeek-Neogen GPP 10k  iManifest (GeneSeek)  iManifest (GeneSeek)  iManifest (GeneSeek) 143
GeneSeek-Neogen GPPHD (80k)  iManifest (GeneSeek)  iManifest (GeneSeek)  iManifest (GeneSeek) 143
Affymetrix Axiom PigHD Axiom PigHD.r3 Axiom PigHD.r3 Axiom PigHD.r3 143 NEW!!

 

 


 

Assembly information: HORSE
Assembly ID (dbSNP)   Assembly name   RefSeq Assembly ID
EquCab v2.0 EquCab2 GCF_000002305.2


 

Chip information (source): HORSE
SNP chipSNP namesNative positionsAllele coding

latest
dbSNP
build

Illumina 50k  iManifest (Illumina)   iManifest (Illumina)   iManifest (Illumina)  144 
GeneSeek-Neogen 65k  iManifest (GeneSeek)  iManifest (GeneSeek)  iManifest (GeneSeek)  144
Affymetrix HD  Axiom GW Horse r1  Axiom GW Horse r1  Axiom GW Horse r1 144

 

 


 

Assembly information: SHEEP
Assembly ID (dbSNP)   Assembly name   RefSeq Assembly ID
Oar v.3.1 Oar3 GCF_000298735.1
Oar v.4.0 Oar4 GCA_000298735.2


 

Chip information (source): SHEEP
SNP chipSNP namesNative positionsAllele coding

latest
dbSNP
build

Illumina 50k  iManifest (Illumina)   iManifest (Illumina)   iManifest (Illumina)  147 
 AgResearch OvineHD  iManifest (AgResearch)  iManifest (AgResearch)  iManifest (AgResearch)  147

  

 

 


 

Assembly information: GOAT
Assembly ID (dbSNP)   Assembly name   RefSeq Assembly ID
CHIR v.1.0 CHIR_1.0 GCF_000317765.1
Oar v.3.1 Oar3 GCF_000298735.1
UMD v3.1.1 UMD3.1 GCF_000003055.5


  

Chip information (source): GOAT
SNP chipSNP namesNative positionsAllele coding

latest
dbSNP
build

IGGC-Illumina 50k  iManifest (IGGC)   iManifest (IGGC)   iManifest (IGGC)  143 

 

  

 


 

Assembly information: CHICKEN
Assembly ID (dbSNP)   Assembly name   RefSeq Assembly ID
Gallus Gallus v4.0 Gallus_Gallus-4.0 GCF_000002315.3
Gallus Gallus v2.1 Gallus_Gallus-2.1 GCF_000002315.2


 

Chip information (source): CHICKEN
SNP chipSNP namesNative positionsAllele coding

latest
dbSNP
build

Affymetrix HD  Axiom GW Chick v.35  Axiom GW Chick v.35  Axiom GW Chick v.35  147  
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